It doesn't clear whether "Manual Bundle Name" custom field is for affects bundle or fixed-in bundle
currently there is no affects/fixed-in identification for "Manual Bundle Name" CF. It is both for fixed and affects bundle. Customer is adding two instance of this CF expecting one is fixed in bundle and the other one is affects bundle but fixedInBundle/affectsBundle JQLs doesn't know the difference between the two. Because they differ only by customer provided name.